species:   Scscl
pid:       PID1602
parent:    Ssc-milR-78
paralog:   
locus:     NW_001820820.1:882354-882402
matures:   ['UAUGAUCUUGGGUUGGUAUAAU', 'UAUUGGGCUUAGGGAUGAUU']
srr:       SRR12527899
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527899.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527899.cram NW_001820820.1:882354-882402

2 out of bounds
3 alignments
3 proper strand
2 stranded perfect matches

*********************        ********************
GUAUGAUCUUGGGUUGGUAUAAUCGGGCUUAUUGGGCUUAGGGAUGAUU
.......((((((((.(.((((......))))).)))))))).......
-UAUGAUCUUGGGUUGGUAUAAU-------------------------- l=22 a=0 c
-----------------------------UAUUGGGCUUAGGGAUGAUU l=20 a=0 c*
-UAUGAUCUUGGGUUGGUAUA---------------------------- l=20 a=1 ma
-------------------------------UUGGGCUUAGGGAUGAUU l=18 a=0 ma*

-UAUGAUCUUGGGUUGGUAUA---------------------------- l=20 a=1 (ma)
---UGAUCUUGGGUUGGUAUAAUaG------------------------ l=22 a=1 
-----------------UAUAAUCGGGCUUAUUGG-------------- l=18 a=1 

mb-01010
ax-1001011
ku-01
ss-100111101100
fn-111
